OpenELIS GLOBAL2 Implementation Guide
0.1.0 - ci-build

OpenELIS GLOBAL2 Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions

Resource Profile: OpenElis Specimen

Official URL: http://i-tech-uw.github.io/openelis-global-ig/StructureDefinition/open-elis-specimen Version: 0.1.0
Active as of 2023-03-05 Computable Name: OpenElisSpecimen

A Specimen Resource used for FHIR Exchange

Usage:

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id 0..1idLogical id of this artifact
... Slices for identifier 1..*IdentifierExternal Identifier
Slice: Unordered, Open by value:system
.... identifier:uuid 1..1IdentifierExternal Identifier
..... system 1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
... accessionIdentifier 1..1IdentifierIdentifier assigned by the lab
.... value 0..1stringThe value that is unique
... type 1..1CodeableConceptKind of material that forms the specimen
.... coding
..... code 0..1codeSymbol in syntax defined by the system
..... display 0..1stringRepresentation defined by the system
... subject 1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime 1..1dateTimeThe time when specimen was received for processing
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... collected[x] 1..1dateTimeCollection time
Slice: Unordered, Open by type:$this
.... collectedDateTime 1..1dateTimeCollection time

doco Documentation for this format

Terminology Bindings (Differential)

PathConformanceValueSet
Specimen.statusrequiredOpenElisSpecimenStatusVS
NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id Σ0..1idLogical id of this artifact
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
.... identifier:uuid Σ1..1IdentifierExternal Identifier
..... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... system Σ1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
... accessionIdentifier Σ1..1IdentifierIdentifier assigned by the lab
.... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

.... value Σ0..1stringThe value that is unique
Example General: 123456
... status ?!Σ1..1codeavailable | unavailable | unsatisfactory | entered-in-error
Binding: Specimen status Valueset (required)
... type Σ1..1CodeableConceptKind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

... subject Σ1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime Σ1..1dateTimeThe time when specimen was received for processing
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... Slices for collected[x] Σ1..1dateTimeCollection time
Slice: Unordered, Closed by type:$this
..... collected[x]:collectedDateTime Σ1..1dateTimeCollection time

doco Documentation for this format

Terminology Bindings

PathConformanceValueSet
Specimen.identifier:uuid.userequiredIdentifierUse
Specimen.accessionIdentifier.userequiredIdentifierUse
Specimen.statusrequiredOpenElisSpecimenStatusVS
Specimen.typeexampleHl7VSSpecimenType

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id Σ0..1idLogical id of this artifact
... meta Σ0..1MetaMetadata about the resource
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... text 0..1NarrativeText summary of the resource, for human interpretation
... contained 0..*ResourceContained, inline Resources
... extension 0..*ExtensionAdditional content defined by implementations
... modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
... Slices for identifier Σ1..*IdentifierExternal Identifier
Slice: Unordered, Open by value:system
.... identifier:uuid Σ1..1IdentifierExternal Identifier
..... id 0..1stringUnique id for inter-element referencing
..... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ0..1CodeableConceptDescription of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
..... value Σ0..1stringThe value that is unique
Example General: 123456
..... period Σ0..1PeriodTime period when id is/was valid for use
..... assigner Σ0..1Reference(Organization)Organization that issued id (may be just text)
... accessionIdentifier Σ1..1IdentifierIdentifier assigned by the lab
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
.... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

.... type Σ0..1CodeableConceptDescription of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

.... system Σ0..1uriThe namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value Σ0..1stringThe value that is unique
Example General: 123456
.... period Σ0..1PeriodTime period when id is/was valid for use
.... assigner Σ0..1Reference(Organization)Organization that issued id (may be just text)
... status ?!Σ1..1codeavailable | unavailable | unsatisfactory | entered-in-error
Binding: Specimen status Valueset (required)
... type Σ1..1CodeableConceptKind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
.... coding Σ0..*CodingCode defined by a terminology system
..... id 0..1stringUnique id for inter-element referencing
..... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
..... system Σ0..1uriIdentity of the terminology system
..... version Σ0..1stringVersion of the system - if relevant
..... code Σ0..1codeSymbol in syntax defined by the system
..... display Σ0..1stringRepresentation defined by the system
..... userSelected Σ0..1booleanIf this coding was chosen directly by the user
.... text Σ0..1stringPlain text representation of the concept
... subject Σ1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime Σ1..1dateTimeThe time when specimen was received for processing
... parent 0..*Reference(Specimen)Specimen from which this specimen originated
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... collector Σ0..1Reference(Practitioner | PractitionerRole)Who collected the specimen
.... Slices for collected[x] Σ1..1dateTimeCollection time
Slice: Unordered, Closed by type:$this
..... collected[x]:collectedDateTime Σ1..1dateTimeCollection time
.... duration Σ0..1DurationHow long it took to collect specimen
.... quantity 0..1SimpleQuantityThe quantity of specimen collected
.... method 0..1CodeableConceptTechnique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.

.... bodySite 0..1CodeableConceptAnatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.

.... fastingStatus[x] Σ0..1Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.

..... fastingStatusCodeableConceptCodeableConcept
..... fastingStatusDurationDuration
... processing 0..*BackboneElementProcessing and processing step details
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... description 0..1stringTextual description of procedure
.... procedure 0..1CodeableConceptIndicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.

.... additive 0..*Reference(Substance)Material used in the processing step
.... time[x] 0..1Date and time of specimen processing
..... timeDateTimedateTime
..... timePeriodPeriod
... container 0..*BackboneElementDirect container of specimen (tube/slide, etc.)
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... identifier Σ0..*IdentifierId for the container
.... description 0..1stringTextual description of the container
.... type 0..1CodeableConceptKind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.

.... capacity 0..1SimpleQuantityContainer volume or size
.... specimenQuantity 0..1SimpleQuantityQuantity of specimen within container
.... additive[x] 0..1Additive associated with container
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.

..... additiveCodeableConceptCodeableConcept
..... additiveReferenceReference(Substance)
... condition Σ0..*CodeableConceptState of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.


... note 0..*AnnotationComments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSet
Specimen.languagepreferredCommonLanguages
Additional Bindings Purpose
AllLanguages Max Binding
Specimen.identifier:uuid.userequiredIdentifierUse
Specimen.identifier:uuid.typeextensibleIdentifier Type Codes
Specimen.accessionIdentifier.userequiredIdentifierUse
Specimen.accessionIdentifier.typeextensibleIdentifier Type Codes
Specimen.statusrequiredOpenElisSpecimenStatusVS
Specimen.typeexampleHl7VSSpecimenType
Specimen.collection.methodexampleFHIRSpecimenCollectionMethod
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
Specimen.collection.fastingStatus[x]extensibleHl7VSRelevantClincialInformation
Specimen.processing.procedureexampleSpecimenProcessingProcedure
Specimen.container.typeexampleSpecimenContainerType
Specimen.container.additive[x]exampleHl7VSAdditivePreservative
Specimen.conditionextensibleHl7VSSpecimenCondition

Constraints

IdGradePath(s)DetailsRequirements
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

This structure is derived from Specimen

Summary

Mandatory: 12 elements

Structures

This structure refers to these other structures:

Slices

This structure defines the following Slices:

  • The element Specimen.identifier is sliced based on the value of value:system
  • The element Specimen.collection.collected[x] is sliced based on the value of type:$this

Differential View

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id 0..1idLogical id of this artifact
... Slices for identifier 1..*IdentifierExternal Identifier
Slice: Unordered, Open by value:system
.... identifier:uuid 1..1IdentifierExternal Identifier
..... system 1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
... accessionIdentifier 1..1IdentifierIdentifier assigned by the lab
.... value 0..1stringThe value that is unique
... type 1..1CodeableConceptKind of material that forms the specimen
.... coding
..... code 0..1codeSymbol in syntax defined by the system
..... display 0..1stringRepresentation defined by the system
... subject 1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime 1..1dateTimeThe time when specimen was received for processing
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... collected[x] 1..1dateTimeCollection time
Slice: Unordered, Open by type:$this
.... collectedDateTime 1..1dateTimeCollection time

doco Documentation for this format

Terminology Bindings (Differential)

PathConformanceValueSet
Specimen.statusrequiredOpenElisSpecimenStatusVS

Key Elements View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id Σ0..1idLogical id of this artifact
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
.... identifier:uuid Σ1..1IdentifierExternal Identifier
..... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... system Σ1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
... accessionIdentifier Σ1..1IdentifierIdentifier assigned by the lab
.... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

.... value Σ0..1stringThe value that is unique
Example General: 123456
... status ?!Σ1..1codeavailable | unavailable | unsatisfactory | entered-in-error
Binding: Specimen status Valueset (required)
... type Σ1..1CodeableConceptKind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

... subject Σ1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime Σ1..1dateTimeThe time when specimen was received for processing
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... Slices for collected[x] Σ1..1dateTimeCollection time
Slice: Unordered, Closed by type:$this
..... collected[x]:collectedDateTime Σ1..1dateTimeCollection time

doco Documentation for this format

Terminology Bindings

PathConformanceValueSet
Specimen.identifier:uuid.userequiredIdentifierUse
Specimen.accessionIdentifier.userequiredIdentifierUse
Specimen.statusrequiredOpenElisSpecimenStatusVS
Specimen.typeexampleHl7VSSpecimenType

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..*SpecimenSample for analysis
... id Σ0..1idLogical id of this artifact
... meta Σ0..1MetaMetadata about the resource
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... text 0..1NarrativeText summary of the resource, for human interpretation
... contained 0..*ResourceContained, inline Resources
... extension 0..*ExtensionAdditional content defined by implementations
... modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
... Slices for identifier Σ1..*IdentifierExternal Identifier
Slice: Unordered, Open by value:system
.... identifier:uuid Σ1..1IdentifierExternal Identifier
..... id 0..1stringUnique id for inter-element referencing
..... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ0..1CodeableConceptDescription of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ1..1uriThe namespace for the identifier value
Required Pattern: http://openelis-global.org/sampleItem_uuid
..... value Σ0..1stringThe value that is unique
Example General: 123456
..... period Σ0..1PeriodTime period when id is/was valid for use
..... assigner Σ0..1Reference(Organization)Organization that issued id (may be just text)
... accessionIdentifier Σ1..1IdentifierIdentifier assigned by the lab
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
.... use ?!Σ0..1codeusual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

.... type Σ0..1CodeableConceptDescription of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

.... system Σ0..1uriThe namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value Σ0..1stringThe value that is unique
Example General: 123456
.... period Σ0..1PeriodTime period when id is/was valid for use
.... assigner Σ0..1Reference(Organization)Organization that issued id (may be just text)
... status ?!Σ1..1codeavailable | unavailable | unsatisfactory | entered-in-error
Binding: Specimen status Valueset (required)
... type Σ1..1CodeableConceptKind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
.... coding Σ0..*CodingCode defined by a terminology system
..... id 0..1stringUnique id for inter-element referencing
..... extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
..... system Σ0..1uriIdentity of the terminology system
..... version Σ0..1stringVersion of the system - if relevant
..... code Σ0..1codeSymbol in syntax defined by the system
..... display Σ0..1stringRepresentation defined by the system
..... userSelected Σ0..1booleanIf this coding was chosen directly by the user
.... text Σ0..1stringPlain text representation of the concept
... subject Σ1..1Reference(OpenELIS Patient)Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
... receivedTime Σ1..1dateTimeThe time when specimen was received for processing
... parent 0..*Reference(Specimen)Specimen from which this specimen originated
... request 1..1Reference(OpenELIS Service Request)Why the specimen was collected
... collection 1..1BackboneElementCollection details
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... collector Σ0..1Reference(Practitioner | PractitionerRole)Who collected the specimen
.... Slices for collected[x] Σ1..1dateTimeCollection time
Slice: Unordered, Closed by type:$this
..... collected[x]:collectedDateTime Σ1..1dateTimeCollection time
.... duration Σ0..1DurationHow long it took to collect specimen
.... quantity 0..1SimpleQuantityThe quantity of specimen collected
.... method 0..1CodeableConceptTechnique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.

.... bodySite 0..1CodeableConceptAnatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.

.... fastingStatus[x] Σ0..1Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.

..... fastingStatusCodeableConceptCodeableConcept
..... fastingStatusDurationDuration
... processing 0..*BackboneElementProcessing and processing step details
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... description 0..1stringTextual description of procedure
.... procedure 0..1CodeableConceptIndicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.

.... additive 0..*Reference(Substance)Material used in the processing step
.... time[x] 0..1Date and time of specimen processing
..... timeDateTimedateTime
..... timePeriodPeriod
... container 0..*BackboneElementDirect container of specimen (tube/slide, etc.)
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..*ExtensionAdditional content defined by implementations
.... modifierExtension ?!Σ0..*ExtensionExtensions that cannot be ignored even if unrecognized
.... identifier Σ0..*IdentifierId for the container
.... description 0..1stringTextual description of the container
.... type 0..1CodeableConceptKind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.

.... capacity 0..1SimpleQuantityContainer volume or size
.... specimenQuantity 0..1SimpleQuantityQuantity of specimen within container
.... additive[x] 0..1Additive associated with container
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.

..... additiveCodeableConceptCodeableConcept
..... additiveReferenceReference(Substance)
... condition Σ0..*CodeableConceptState of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.


... note 0..*AnnotationComments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSet
Specimen.languagepreferredCommonLanguages
Additional Bindings Purpose
AllLanguages Max Binding
Specimen.identifier:uuid.userequiredIdentifierUse
Specimen.identifier:uuid.typeextensibleIdentifier Type Codes
Specimen.accessionIdentifier.userequiredIdentifierUse
Specimen.accessionIdentifier.typeextensibleIdentifier Type Codes
Specimen.statusrequiredOpenElisSpecimenStatusVS
Specimen.typeexampleHl7VSSpecimenType
Specimen.collection.methodexampleFHIRSpecimenCollectionMethod
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
Specimen.collection.fastingStatus[x]extensibleHl7VSRelevantClincialInformation
Specimen.processing.procedureexampleSpecimenProcessingProcedure
Specimen.container.typeexampleSpecimenContainerType
Specimen.container.additive[x]exampleHl7VSAdditivePreservative
Specimen.conditionextensibleHl7VSSpecimenCondition

Constraints

IdGradePath(s)DetailsRequirements
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

This structure is derived from Specimen

Summary

Mandatory: 12 elements

Structures

This structure refers to these other structures:

Slices

This structure defines the following Slices:

  • The element Specimen.identifier is sliced based on the value of value:system
  • The element Specimen.collection.collected[x] is sliced based on the value of type:$this

 

Other representations of profile: CSV, Excel, Schematron