OpenELIS GLOBAL2 Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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Resource Profile: OpenElisSpecimen - Mappings

Draft as of 2024-12-11

Mappings for the open-elis-specimen resource profile.

Mappings for OpenELIS Vs FHIR (http://i-tech-uw.github.io/openelis-global-ig/StructureDefinition/open-elis-specimen)

Specimen Mapping shows how attributes of FHIR Specimen Resource maps to and from the attributes of OpenElis SampleItem Object.

OpenElisSpecimen
Specimen	OE Specimen	This profile maps FHIR Specimen to OE DataExchange.
id	SampleItem.fhirUuid
accessionIdentifier
value	SampleItem.sample.accessionNumber
type
coding
code	SampleItem.typeOfSample.localAbbreviation
display	SampleItem.typeOfSample.localizedName
subject	Patient
request	Analysis
collection	SampleItem.collectionDate

Mappings for RIM Mapping (http://hl7.org/v3)

OpenElisSpecimen
Specimen	Entity. Role, or Act, Role[classCode=SPEC]
text	Act.text?
contained	N/A
extension	N/A
modifierExtension	N/A
identifier	.id
identifier (uuid)	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
accessionIdentifier	.participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
status	status
type	.code
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
subject	.scoper or .scoper.playsRole
receivedTime	.participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
parent	.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
request	outboundRelationship[typeCode=FLFS].target
collection	.participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
collector	.participation[typeCode=PFM].role
collected[x]	.effectiveTime
collected[x] (collectedDateTime)	.effectiveTime
quantity	.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
method	.methodCode
bodySite	.targetSiteCode
processing	.participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
description	.text
procedure	.code
additive	.participation[typeCode=CSM].role[classCode=ADTV].code
time[x]	.effectiveTime
container	.player.scopingRole[classCode=CONT].scoper
id	n/a
extension	n/a
modifierExtension	N/A
identifier	.id
description	.desc
type	.code
capacity	.quantity
specimenQuantity	.playedRole[classCode=CONT].quantity
additive[x]	.scopesRole[classCode=ADTV].player
note	.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

OpenElisSpecimen
Specimen
identifier	FiveWs.identifier
identifier (uuid)	FiveWs.identifier
accessionIdentifier	FiveWs.identifier
status	FiveWs.status
type	FiveWs.what[x]
subject	FiveWs.subject[x], FiveWs.subject
receivedTime	FiveWs.done[x]
request	FiveWs.why[x]
collection
collector	FiveWs.actor
collected[x]	FiveWs.init
collected[x] (collectedDateTime)	FiveWs.init
duration	FiveWs.init

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

OpenElisSpecimen
Specimen
identifier	SPM-2
identifier (uuid)	SPM-2
use	N/A
type	CX.5
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
accessionIdentifier	SPM-30 (v2.7+)
use	N/A
type	CX.5
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
status	SPM-20
type	SPM-4 and possibly SPM-5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
receivedTime	SPM-18
request	ORC? OBR-2/3?
collection	SPM-14
collector	PRT
collected[x]	SPM-17
collected[x] (collectedDateTime)	SPM-17
quantity	SPM-12
method	SPM-7
bodySite	SPM-8 and SPM-9
fastingStatus[x]	OBR-
processing
additive	SPM-6
container
identifier	SAC-3
type	SPM-27
capacity	one of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
specimenQuantity	SAC-23 (value) SAC-24 (units
additive[x]	SAC-27
condition	SPM-24
note	OBX